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ProbABEL

Description

ProbABEL is a tool for genome-wide association analysis of imputed genetic data.

The ProbABEL home page is at http://www.genabel.org/packages/ProbABEL.

Available modules

Packages with modules

Module NeSI Cluster
ProbABEL/0.4.4-ictce-5.4.0 pan

Licensing requirements

ProbABEL is made available at no cost under the terms of version 2 of the GNU General Public Licence. A copy of the text of this licence is available at https://gnu.org/licenses/old-licenses/gpl-2.0.html.

Example script for the Pan cluster

#!/bin/bash -e

#SBATCH --job-name      ProbABEL_job
#SBATCH --account       nesi99999
#SBATCH --time          01:00:00
#SBATCH --mem-per-cpu   4G
#SBATCH --output        ProbABEL_job.%j.out # Include the job ID in the names
#SBATCH --error         ProbABEL_job.%j.err # of the output and error files

module load ProbABEL/0.4.4-ictce-5.4.0

srun palogist --pheno phenotype_file --info info_file --dose predictor_file

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